Thinking about what the gum is, I look at it this way. IIRC you say the pump has done around 90K on Bio. At an average of 40MPG, that comes out at around 2250 gallons of Bio. If my maths is right, that's over 10K litres.
If 10 % of whatever it is has stayed in the pump, then that is still an incredibly small amount of whatever the gum is. I would suggest, if it is some sort of contaminant, or by product from the reaction, then it could be virtually impossible to detect in a batch.
Of course, if it is Bio changing into something else, then that is a different story altogether.
Another thing, is this gum coming out in a pressurised area of the pump? Could it be something to do with the pressure causing dropout, or somehow altering the state of the bio?