Other than the post you mention, ive never read discussion of FFAs being produced in the 'standard' process (i know paul.c gets up to all sorts though!)
Their mention is generally how to deal with them in the feedstock (ie they have been produced outside of our processes)
What i mean to say is that we dont generally seem to be involved in 'creating' them, but rather 'dealing with' them.
Im not sure of the means of production outside of our process, other than the little i know about splitting them off from the waste 'glycerol' and the brief reading ive done on the acid catalysed reaction, but, again, im not sure this is what you are asking about?