I've suffered badly from the dreaded brown sludge in the past and have never been able to work out where it comes from.
Tonight I watched a video about a couple who were having trouble with their diesel engines on a catamaran whilst sailing round the world. They showed a brown jelly like substance in the fuel tanks which they said was poop from "bugs" in the fuel. While what I've suffered isn't a jelly, the colour was identical (if it is bug poop perhaps my bug were a little more constipated!)
They only ever used dino diesel, but obviously took on fuel from some dubious sources on their travels and often had water in the fuel. The claimed that the bugs existed in the water/fuel interface, something I've heard before.
For my part this seems a highly plausible explanation of the problems I've experienced and it would explain how the IP got full of the stuff. I'm guessing the bugs may be small enough to pass through the filter and spent their life shitting in my injector pump, the little buggers. I've never noticed water in my fuel, but with bio being so different to diesel I wonder if there are bugs that can exist in pure bio.
Interested in the thoughts of others.