It's difficult and probably not economical to distill every last drop of methanol especially if your pump, venturi, condenser set up isn't up to scratch (as mine isn't).
If you can afford the time the bio will eventually clear in the settling tank. Take a sample and leave it on the side. You should notice a slowly increasing depth of clear bio appearing at the top.
Returning it to the processor and continuing to distill should work but isn't very economical. After well over 100 batches I'm currently dealing with a batch that won't clear (probably due to an incomplete reaction), so don't worry, it happens to the best of us ... it's all part of the fun of making bio!
Bubbling in the settling tank is quite a valuable and cheap facility to set up. Don't think we have a dedicated page on the wiki, but it's touched upon here ...
http://www.biopowered.co.uk/wiki/Drying_wet_biodiesel and the set up is shown here under bubble washing ...
http://www.biopowered.co.uk/wiki/Water_washing I use a small aquarium pump bought off off ebay for 8 quid and a cintered pneumatic silencer similar to this ...

Make sure the bio won't eat the material. Brass versions are available and will be bio proof. Be a little wary of bubbling when ambient humidity is high, you may be adding water instead of removing it!