I have found the same - ive always thought that it probably clings to the sides of the cone. Somtimes, when its far too cold, i put my 10/90 test flask in the jug of product ive drawn off for testing (to warm it). The glyc tends to cling to the side of the flask when i take it out (way more then the bio)
When i next rebuild my reactor, im going to have the pump slightly higher than the drain port, so i can leave the port open, and the idea was that it would drain the pump also. But i realise this probably wont work, as the impellers will still have fluid lurking at their lower edge : (